Anna Hoge

Bioinformatics Analyst

August 2019 - April 2021


Anna graduated from Middlebury College in Vermont in 2019, with a double major in Molecular Biology & Biochemistry and Computer Science, summa cum laude. A Seattle native, she spent the summer of 2018 at the Institute for Systems Biology, analyzing 16S rRNA sequencing data for microbiome research, and the summer of 2017 at the Allen Institute for Brain Science, analyzing imaging data of the visual cortex. She also conducted research at Arizona State University in 2018 in genetic anthropology. She hopes to pursue medical school or graduate school in Biostatistics. In her free time, Anna likes to paddleboard, sew, and ride her bike.


A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA

Patterns of Structural Variation Define Prostate Cancer Across Disease States

DNA-based copy number analysis confirms genomic evolution of PDX models

CDK12-Mutated Prostate Cancer: Clinical Outcomes with Standard Therapies and Immune Checkpoint Blockade

Software & Code

Structural Variant linked-read pipeline

Copy Number & Structural Variation Pipeline

ichorCNA targeted panel pipeline

TitanCNA linked-read pipeline